Scope | Citing SuperExactTest | Case study | Analyzing all possible intersections among four cis-eQTLs gene sets | References
Package: SuperExactTest 1.1.2
Minghui Wang
SuperExactTest: Exact Test and Visualization of Multi-Set Intersections
Identification of sets of objects with shared features is a common operation in all disciplines. Analysis of intersections among multiple sets is fundamental for in-depth understanding of their complex relationships. This package implements a theoretical framework for efficient computation of statistical distributions of multi-set intersections based upon combinatorial theory, and provides multiple scalable techniques for visualizing the intersection statistics. The statistical algorithm behind this package was published in Wang et al. (2015) <doi:10.1038/srep16923>.
Authors:
SuperExactTest_1.1.2.tar.gz
SuperExactTest_1.1.2.zip(r-4.7)SuperExactTest_1.1.2.zip(r-4.6)SuperExactTest_1.1.2.zip(r-4.5)
SuperExactTest_1.1.2.tgz(r-4.6-x86_64)SuperExactTest_1.1.2.tgz(r-4.6-arm64)SuperExactTest_1.1.2.tgz(r-4.5-x86_64)SuperExactTest_1.1.2.tgz(r-4.5-arm64)
SuperExactTest_1.1.2.tar.gz(r-4.7-arm64)SuperExactTest_1.1.2.tar.gz(r-4.7-x86_64)SuperExactTest_1.1.2.tar.gz(r-4.6-arm64)SuperExactTest_1.1.2.tar.gz(r-4.6-x86_64)
SuperExactTest_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SuperExactTest/json (API)
| # Install 'SuperExactTest' in R: |
| install.packages('SuperExactTest', repos = c('https://mw201608.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mw201608/superexacttest/issues
intersectionsetstatisticsvisualization
Last updated from:1ab3488e38. Checks:11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | NOTE | 125 | ||
| linux-devel-x86_64 | NOTE | 114 | ||
| source / vignettes | OK | 152 | ||
| linux-release-arm64 | NOTE | 127 | ||
| linux-release-x86_64 | NOTE | 119 | ||
| macos-release-arm64 | NOTE | 76 | ||
| macos-release-x86_64 | NOTE | 174 | ||
| macos-oldrel-arm64 | NOTE | 67 | ||
| macos-oldrel-x86_64 | NOTE | 264 | ||
| windows-devel | NOTE | 74 | ||
| windows-release | NOTE | 73 | ||
| windows-oldrel | NOTE | 76 | ||
| wasm-release | OK | 90 |
Exports:cpsetsdeBarcodedpsetsintersectintersectElementsjaccardMSETplot.msetssupertestunion
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cancer Census Dataset | Cancer |
| cis-eQTLs | cis.eqtls |
| Multi-Set Intersection Probability | cpsets dpsets |
| Decrypt Barcode | deBarcode |
| GAWS Catalog Dataset | GWAS |
| Set Operations | intersect union |
| Find Intersection Membership | intersectElements |
| Calculate Jaccard Index | jaccard |
| Exact Test of Multi-Set Intersection | MSET |
| Class to Contain Multi-Set Intersections | msets |
| Draw Multi-Set Intersections | plot.msets |
| Summarize an msets Object | summary.msets |
| SuperExactTest Package | SuperExactTest |
| Calculate Intersections Among Multiple Sets and Perform Statistical Tests | supertest supertest,list-method |