{
  "_id": "6a226847cd65a98ecbd45888",
  "Package": "SuperExactTest",
  "Type": "Package",
  "Title": "Exact Test and Visualization of Multi-Set Intersections",
  "Version": "1.1.2",
  "Date": "2023-12-23",
  "Author": "Minghui Wang, Yongzhong Zhao and Bin Zhang",
  "Maintainer": "Minghui Wang <minghui.wang@mssm.edu>",
  "Contact": "Minghui Wang <minghui.wang@mssm.edu>, Bin Zhang\n<bin.zhang@mssm.edu>",
  "Description": "Identification of sets of objects with shared features is\na common operation in all disciplines. Analysis of\nintersections among multiple sets is fundamental for in-depth\nunderstanding of their complex relationships. This package\nimplements a theoretical framework for efficient computation of\nstatistical distributions of multi-set intersections based upon\ncombinatorial theory, and provides multiple scalable techniques\nfor visualizing the intersection statistics. The statistical\nalgorithm behind this package was published in Wang et al.\n(2015) <doi:10.1038/srep16923>.",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/mw201608/SuperExactTest/",
  "BugReports": "https://github.com/mw201608/SuperExactTest/issues",
  "Repository": "https://mw201608.r-universe.dev",
  "Date/Publication": "2023-12-26 16:51:24 UTC",
  "RemoteUrl": "https://github.com/mw201608/superexacttest",
  "RemoteRef": "HEAD",
  "RemoteSha": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-05 06:06:00 UTC",
    "User": "root"
  },
  "MD5sum": "59054684b83cd611f2ab279d2f31d4ee",
  "_user": "mw201608",
  "_type": "src",
  "_file": "SuperExactTest_1.1.2.tar.gz",
  "_fileid": "8e909cfc8b29652b8d783b50d0965d2d73782fae9f86bc435421c11b14214068",
  "_filesize": 526963,
  "_sha256": "8e909cfc8b29652b8d783b50d0965d2d73782fae9f86bc435421c11b14214068",
  "_created": "2026-06-05T06:06:00.000Z",
  "_published": "2026-06-05T06:10:14.988Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79673500195,
      "time": 139,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7429963891"
    },
    {
      "job": 79673500180,
      "time": 117,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7429959068"
    },
    {
      "job": 79673500203,
      "time": 107,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7429957734"
    },
    {
      "job": 79673500184,
      "time": 140,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7429963648"
    },
    {
      "job": 79673500202,
      "time": 108,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7429956693"
    },
    {
      "job": 79673500189,
      "time": 225,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7429982222"
    },
    {
      "job": 79673500215,
      "time": 73,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7429949254"
    },
    {
      "job": 79673500199,
      "time": 190,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7429974472"
    },
    {
      "job": 79673212958,
      "time": 154,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7429931924"
    },
    {
      "job": 79673500196,
      "time": 90,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7429953102"
    },
    {
      "job": 79673500179,
      "time": 73,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7429949234"
    },
    {
      "job": 79673500171,
      "time": 70,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7429948485"
    },
    {
      "job": 79673500194,
      "time": 88,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7429952770"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/mw201608/superexacttest",
  "_commit": {
    "id": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
    "author": "Minghui Wang <minghui.wang@mssm.edu>",
    "committer": "Minghui Wang <minghui.wang@mssm.edu>",
    "message": "update readme\n",
    "time": 1703609484
  },
  "_maintainer": {
    "name": "Minghui Wang",
    "email": "minghui.wang@mssm.edu"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "grid",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "mw201608",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "intersection",
    "set",
    "statistics",
    "visualization"
  ],
  "_stars": 30,
  "_contributors": [
    {
      "user": "mw201608",
      "count": 67,
      "uuid": 21962488
    }
  ],
  "_userbio": {
    "uuid": 21962488,
    "type": "user",
    "name": "M Wang",
    "description": "I am a statistical and quantitative geneticist at the Icahn School of Medicine at Mount Sinai."
  },
  "_downloads": {
    "count": 257,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SuperExactTest"
  },
  "_mentions": 32,
  "_devurl": "https://github.com/mw201608/superexacttest",
  "_searchresults": 124,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SuperExactTest.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mw201608/superexacttest",
  "_realowner": "mw201608",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.99.1",
      "date": "2015-11-09"
    },
    {
      "version": "0.99.2",
      "date": "2015-11-10"
    },
    {
      "version": "0.99.3",
      "date": "2017-05-06"
    },
    {
      "version": "0.99.4",
      "date": "2017-06-15"
    },
    {
      "version": "1.0.0",
      "date": "2018-02-07"
    },
    {
      "version": "1.0.4",
      "date": "2018-10-26"
    },
    {
      "version": "1.0.6",
      "date": "2019-02-26"
    },
    {
      "version": "1.0.7",
      "date": "2019-06-21"
    },
    {
      "version": "1.1.0",
      "date": "2022-03-23"
    }
  ],
  "_exports": [
    "cpsets",
    "deBarcode",
    "dpsets",
    "intersect",
    "intersectElements",
    "jaccard",
    "MSET",
    "plot.msets",
    "supertest",
    "union"
  ],
  "_datasets": [
    {
      "name": "Cancer",
      "title": "Cancer Census Dataset",
      "object": "Cancer",
      "file": "Cancer.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "cis.eqtls",
      "title": "cis-eQTLs",
      "object": "eqtls",
      "file": "eqtls.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "GWAS",
      "title": "GAWS Catalog Dataset",
      "object": "GWAS",
      "file": "GWAS.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "Cancer",
      "title": "Cancer Census Dataset",
      "topics": [
        "Cancer"
      ]
    },
    {
      "page": "eqtls",
      "title": "cis-eQTLs",
      "topics": [
        "cis.eqtls"
      ]
    },
    {
      "page": "cpsets",
      "title": "Multi-Set Intersection Probability",
      "topics": [
        "cpsets",
        "dpsets"
      ]
    },
    {
      "page": "deBarcode",
      "title": "Decrypt Barcode",
      "topics": [
        "deBarcode"
      ]
    },
    {
      "page": "GWAS",
      "title": "GAWS Catalog Dataset",
      "topics": [
        "GWAS"
      ]
    },
    {
      "page": "intersect",
      "title": "Set Operations",
      "topics": [
        "intersect",
        "union"
      ]
    },
    {
      "page": "intersectElements",
      "title": "Find Intersection Membership",
      "topics": [
        "intersectElements"
      ]
    },
    {
      "page": "jacaard",
      "title": "Calculate Jaccard Index",
      "topics": [
        "jaccard"
      ]
    },
    {
      "page": "MSET",
      "title": "Exact Test of Multi-Set Intersection",
      "topics": [
        "MSET"
      ]
    },
    {
      "page": "msets",
      "title": "Class to Contain Multi-Set Intersections",
      "topics": [
        "msets"
      ]
    },
    {
      "page": "plot",
      "title": "Draw Multi-Set Intersections",
      "topics": [
        "plot.msets"
      ]
    },
    {
      "page": "summary",
      "title": "Summarize an msets Object",
      "topics": [
        "summary.msets"
      ]
    },
    {
      "page": "SuperExactTest",
      "title": "SuperExactTest Package",
      "topics": [
        "SuperExactTest"
      ]
    },
    {
      "page": "supertest",
      "title": "Calculate Intersections Among Multiple Sets and Perform Statistical Tests",
      "topics": [
        "supertest",
        "supertest,list-method"
      ]
    }
  ],
  "_readme": "https://github.com/mw201608/superexacttest/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "set_html.Rmd",
      "filename": "set_html.html",
      "title": "Multi-set Intersection Analysis Using SuperExactTest",
      "author": "Minghui Wang, Yongzhong Zhao, Bin Zhang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Scope",
        "Citing SuperExactTest",
        "Case study",
        "Analyzing all possible intersections among four cis-eQTLs gene sets",
        "References"
      ],
      "created": "2018-04-12 20:58:50",
      "modified": "2022-03-23 15:39:57",
      "commits": 3
    }
  ],
  "_score": 7.7466341989375795,
  "_indexed": true,
  "_nocasepkg": "superexacttest",
  "_universes": [
    "mw201608"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-06-05T06:08:24.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "29e0722c117144d86c5c870a6c8851a3dd84e10947be329f533942695e384ae7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:56.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "1b3f4121773fe6b65402fa2a9c8bf1ca457cae3359a06a14ea9e0d14685ad3c6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:55.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "23ffb529263f5cc3416f3203a249d2121aef726188a1f9640704dae8135a63e0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-06-05T06:08:18.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "b8f20c96e13d3bdfb75b0869c46e7581d949f3c63d318b98dd98a2d182080779",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:46.000Z",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "552f177f74d037208e140d51af88863f58fd208d842592a7135b15e5648ba6b2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-06-05T06:09:26.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "336e16e1fbf8105ac5ae7bc501eaa9d3ed3fbf1e03a213cb25a5dfead52204ed",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:18.000Z",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "33c4f0c262848b5de2184b79da896cfc806a2ca705f9389a8915021aae7f23f7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-06-05T06:08:50.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "598511a1b9d5aaf4bb3227826551c7132f052bba10afda51fcc2e1103f0ec493",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:45.000Z",
      "arch": "emscripten",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "86598797506945704c9aaa918c0047ae951ad7a7b64e85a7fe440858162c28f3",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:04.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "0226e663934fdbb1ebe4baa89d69d1d9ca41bf5aef5766958b7f6a02697205e7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:00.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "9c9ab42b6012168d8c3128d0db88f9b8107985e19bca6f94f8c3b7606d4dec23",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-06-05T06:07:10.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "c378b9236399ae7f7e4f28c7d5e43fb9fd42bfbddd1abbe2a5ad4fc9fe105f05",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/26998463414"
    }
  ]
}