{
  "_id": "6a4a49e91e9cffeb4b83330c",
  "Package": "SuperExactTest",
  "Type": "Package",
  "Title": "Exact Test and Visualization of Multi-Set Intersections",
  "Version": "1.1.2",
  "Date": "2023-12-23",
  "Author": "Minghui Wang, Yongzhong Zhao and Bin Zhang",
  "Maintainer": "Minghui Wang <minghui.wang@mssm.edu>",
  "Contact": "Minghui Wang <minghui.wang@mssm.edu>, Bin Zhang\n<bin.zhang@mssm.edu>",
  "Description": "Identification of sets of objects with shared features is\na common operation in all disciplines. Analysis of\nintersections among multiple sets is fundamental for in-depth\nunderstanding of their complex relationships. This package\nimplements a theoretical framework for efficient computation of\nstatistical distributions of multi-set intersections based upon\ncombinatorial theory, and provides multiple scalable techniques\nfor visualizing the intersection statistics. The statistical\nalgorithm behind this package was published in Wang et al.\n(2015) <doi:10.1038/srep16923>.",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/mw201608/SuperExactTest/",
  "BugReports": "https://github.com/mw201608/SuperExactTest/issues",
  "Repository": "https://mw201608.r-universe.dev",
  "Date/Publication": "2023-12-26 16:51:24 UTC",
  "RemoteUrl": "https://github.com/mw201608/superexacttest",
  "RemoteRef": "HEAD",
  "RemoteSha": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-05 12:04:25 UTC",
    "User": "root"
  },
  "_user": "mw201608",
  "_type": "src",
  "_file": "SuperExactTest_1.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/df1713807802a1219603b92bd080025772bdf846c9984ea939f6f27904b09dc4",
  "_filesize": 529420,
  "_sha256": "df1713807802a1219603b92bd080025772bdf846c9984ea939f6f27904b09dc4",
  "_expires": "2026-10-13T12:11:19.000Z",
  "_created": "2026-07-05T12:04:25.000Z",
  "_published": "2026-07-05T12:11:21.058Z",
  "_jobs": [
    {
      "job": 85221395577,
      "time": 125,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8091601309"
    },
    {
      "job": 85221395575,
      "time": 114,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8091599560"
    },
    {
      "job": 85221395564,
      "time": 127,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8091601411"
    },
    {
      "job": 85221395560,
      "time": 119,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8091600145"
    },
    {
      "job": 85221395576,
      "time": 67,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8091609122"
    },
    {
      "job": 85221395572,
      "time": 264,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8091634645"
    },
    {
      "job": 85221395565,
      "time": 76,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8091608772"
    },
    {
      "job": 85221395568,
      "time": 174,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8091618541"
    },
    {
      "job": 85221221970,
      "time": 152,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8091584705"
    },
    {
      "job": 85221395552,
      "time": 90,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8091596433"
    },
    {
      "job": 85221395554,
      "time": 74,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8091594228"
    },
    {
      "job": 85221395563,
      "time": 76,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8091594590"
    },
    {
      "job": 85221395569,
      "time": 73,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8091594094"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426",
  "_status": "success",
  "_upstream": "https://github.com/mw201608/superexacttest",
  "_commit": {
    "id": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
    "author": "Minghui Wang <minghui.wang@mssm.edu>",
    "committer": "Minghui Wang <minghui.wang@mssm.edu>",
    "message": "update readme\n",
    "time": 1703609484
  },
  "_maintainer": {
    "name": "Minghui Wang",
    "email": "minghui.wang@mssm.edu"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "grid",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "mw201608",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "intersection",
    "set",
    "statistics",
    "visualization"
  ],
  "_stars": 30,
  "_contributors": [
    {
      "user": "mw201608",
      "count": 67,
      "uuid": 21962488
    }
  ],
  "_userbio": {
    "uuid": 21962488,
    "type": "user",
    "name": "M Wang",
    "followers": 13,
    "description": "I am a statistical and quantitative geneticist at the Icahn School of Medicine at Mount Sinai."
  },
  "_downloads": {
    "count": 371,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SuperExactTest"
  },
  "_mentions": 32,
  "_devurl": "https://github.com/mw201608/superexacttest",
  "_searchresults": 131,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SuperExactTest.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mw201608/superexacttest",
  "_realowner": "mw201608",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.99.1",
      "date": "2015-11-09"
    },
    {
      "version": "0.99.2",
      "date": "2015-11-10"
    },
    {
      "version": "0.99.3",
      "date": "2017-05-06"
    },
    {
      "version": "0.99.4",
      "date": "2017-06-15"
    },
    {
      "version": "1.0.0",
      "date": "2018-02-07"
    },
    {
      "version": "1.0.4",
      "date": "2018-10-26"
    },
    {
      "version": "1.0.6",
      "date": "2019-02-26"
    },
    {
      "version": "1.0.7",
      "date": "2019-06-21"
    },
    {
      "version": "1.1.0",
      "date": "2022-03-23"
    }
  ],
  "_exports": [
    "cpsets",
    "deBarcode",
    "dpsets",
    "intersect",
    "intersectElements",
    "jaccard",
    "MSET",
    "plot.msets",
    "supertest",
    "union"
  ],
  "_datasets": [
    {
      "name": "Cancer",
      "title": "Cancer Census Dataset",
      "object": "Cancer",
      "file": "Cancer.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "cis.eqtls",
      "title": "cis-eQTLs",
      "object": "eqtls",
      "file": "eqtls.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "GWAS",
      "title": "GAWS Catalog Dataset",
      "object": "GWAS",
      "file": "GWAS.RData",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "Cancer",
      "title": "Cancer Census Dataset",
      "topics": [
        "Cancer"
      ]
    },
    {
      "page": "eqtls",
      "title": "cis-eQTLs",
      "topics": [
        "cis.eqtls"
      ]
    },
    {
      "page": "cpsets",
      "title": "Multi-Set Intersection Probability",
      "topics": [
        "cpsets",
        "dpsets"
      ]
    },
    {
      "page": "deBarcode",
      "title": "Decrypt Barcode",
      "topics": [
        "deBarcode"
      ]
    },
    {
      "page": "GWAS",
      "title": "GAWS Catalog Dataset",
      "topics": [
        "GWAS"
      ]
    },
    {
      "page": "intersect",
      "title": "Set Operations",
      "topics": [
        "intersect",
        "union"
      ]
    },
    {
      "page": "intersectElements",
      "title": "Find Intersection Membership",
      "topics": [
        "intersectElements"
      ]
    },
    {
      "page": "jacaard",
      "title": "Calculate Jaccard Index",
      "topics": [
        "jaccard"
      ]
    },
    {
      "page": "MSET",
      "title": "Exact Test of Multi-Set Intersection",
      "topics": [
        "MSET"
      ]
    },
    {
      "page": "msets",
      "title": "Class to Contain Multi-Set Intersections",
      "topics": [
        "msets"
      ]
    },
    {
      "page": "plot",
      "title": "Draw Multi-Set Intersections",
      "topics": [
        "plot.msets"
      ]
    },
    {
      "page": "summary",
      "title": "Summarize an msets Object",
      "topics": [
        "summary.msets"
      ]
    },
    {
      "page": "SuperExactTest",
      "title": "SuperExactTest Package",
      "topics": [
        "SuperExactTest"
      ]
    },
    {
      "page": "supertest",
      "title": "Calculate Intersections Among Multiple Sets and Perform Statistical Tests",
      "topics": [
        "supertest",
        "supertest,list-method"
      ]
    }
  ],
  "_readme": "https://github.com/mw201608/superexacttest/raw/HEAD/README.md",
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "set_html.Rmd",
      "filename": "set_html.html",
      "title": "Multi-set Intersection Analysis Using SuperExactTest",
      "author": "Minghui Wang, Yongzhong Zhao, Bin Zhang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Scope",
        "Citing SuperExactTest",
        "Case study",
        "Analyzing all possible intersections among four cis-eQTLs gene sets",
        "References"
      ],
      "created": "2018-04-12 20:58:50",
      "modified": "2022-03-23 15:39:57",
      "commits": 3
    }
  ],
  "_score": 7.770483809431108,
  "_indexed": true,
  "_nocasepkg": "superexacttest",
  "_universes": [
    "mw201608"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-07-05T12:06:37.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/7620008944967a34aade17bdb31a963c17c114ebca387c086b4a087087e07f94",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-07-05T12:06:18.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/e9fee27e554236712d86d61a0973f04d78cf55c6bcf5e2e0a6eb748c0fbe95da",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-07-05T12:06:36.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/6ba349e2796ce135596b76e05acc993c3c0475a4d5dd748715d62d157a08d9b6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.1.2",
      "date": "2026-07-05T12:06:22.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/3c83c2813c2d8e86a32e54c63c629ec51e1d1395dd36001bce5fc400ecb2bb2b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-07-05T12:07:33.000Z",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/f2b54dd578f5d4e3eb365a9c2d29935cc214f675e70a116a6230e16e40b469ef",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-07-05T12:10:24.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/34f894ea8a92d75d251eb3fd20f7460f23ea074e7f837bce863f3c8ce6aefd94",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-07-05T12:07:29.000Z",
      "arch": "aarch64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/17b782896636c38dcbd40af0b3e4d1170929c985ce64ac47e21458e369a30e2b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.1.2",
      "date": "2026-07-05T12:08:24.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/d28103fbc823d1c9ad02e0572be0d8c0050d691c1cac6f01349f1a73a60f6f0e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.2",
      "date": "2026-07-05T12:06:09.000Z",
      "arch": "emscripten",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/d3b135af3776d73b97a8c9e1eeb3cd78980dc1e84c3ab6f3b184dcef76273991",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-07-05T12:05:24.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/ff69716f7e9920703e754c0bf0a4cc82e9493e1a2d74a64f879bb23ae8db5dc4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-07-05T12:05:29.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/327121034c3db91fbf7c5209afc607872a7bd6a430d8a97c3f26e44fd2d38551",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.1.2",
      "date": "2026-07-05T12:05:27.000Z",
      "arch": "x86_64",
      "commit": "1ab3488e38b041b1d1f38eeb029f5073e9966123",
      "fileid": "https://r2.ropensci.org/f21af668f18d7109e21c8da8d809f3c6cb21e883736a1ae1bfe01fc0739bc75b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mw201608/actions/runs/28740092426"
    }
  ]
}