Scope | Citing NetWeaver | Case study: gene coexpression network modules
Package: NetWeaver 0.0.9
NetWeaver: Graphic Presentation of Complex Genomic and Network Data Analysis
Implements various simple function utilities and flexible pipelines to generate circular images for visualizing complex genomic and network data analysis features.
Authors:
NetWeaver_0.0.9.tar.gz
NetWeaver_0.0.9.zip(r-4.7)NetWeaver_0.0.9.zip(r-4.6)NetWeaver_0.0.9.zip(r-4.5)
NetWeaver_0.0.9.tgz(r-4.6-any)NetWeaver_0.0.9.tgz(r-4.5-any)
NetWeaver_0.0.9.tar.gz(r-4.7-any)NetWeaver_0.0.9.tar.gz(r-4.6-any)
NetWeaver_0.0.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
NetWeaver/json (API)
| # Install 'NetWeaver' in R: |
| install.packages('NetWeaver', repos = c('https://mw201608.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mw201608/netweaver/issues
Datasets:
- Modules - Example Module Dataset
- ucsc.hg19.cytoband - Human chromosome cytoband
- ucsc.hg38.cytoband - Human chromosome cytoband
Last updated from:461b42bd71. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 123 | ||
| source / vignettes | OK | 182 | ||
| linux-release-x86_64 | WARNING | 112 | ||
| macos-release-arm64 | WARNING | 76 | ||
| macos-oldrel-arm64 | WARNING | 78 | ||
| windows-devel | WARNING | 64 | ||
| windows-release | WARNING | 83 | ||
| windows-oldrel | WARNING | 92 | ||
| wasm-release | OK | 97 |
Exports:ensemble_rankgetrankpis.overlaprc.get.coordinatesrc.get.paramsrc.get.trackCoordinatesrc.initializerc.plot.arearc.plot.barchartrc.plot.grColLegendrc.plot.heatmaprc.plot.histogramrc.plot.ideogramrc.plot.linerc.plot.linkrc.plot.mHistogramrc.plot.pointrc.plot.ribbonrc.plot.textrc.plot.trackrc.plot.track.idrc.reset.paramsrc.track.pos
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Ensemble Rank | ensemble_rank |
| getrankp | getrankp |
| Region overlap test | is.overlap |
| Example Module Dataset | Modules |
| Graphic Presentation of Complex Genomic and Network Data Analysis | NetWeaver-package NetWeaver |
| Get Coordinates | rc.get.coordinates rc.get.trackCoordinates |
| Get Parameters | rc.get.params |
| Initialize Circos Plot Parameters | rc.initialize |
| Setup Plot Area | rc.plot.area |
| Bar Plots | rc.plot.barchart |
| Plot Gradient Color Legend | rc.plot.grColLegend |
| Plot Heat-map | rc.plot.heatmap |
| Plot Histogram, Barchart or Heat-map | rc.plot.histogram |
| Plot Ideogram | rc.plot.ideogram |
| Plot Line | rc.plot.line |
| Plot Link | rc.plot.link |
| Plot Histogram or Barplot Across Chromosomes | rc.plot.mHistogram |
| Plot Point | rc.plot.point |
| Plot Ribbon | rc.plot.ribbon |
| Plot Text | rc.plot.text |
| Plot Track | rc.plot.track |
| Plot Track Id | rc.plot.track.id |
| Reset Circos Plot Parameters | rc.reset.params |
| Get Track Positions | rc.track.pos |
| Human chromosome cytoband | ucsc.hg19.cytoband ucsc.hg38.cytoband |
